PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.001G087900.1
Common NamePHAVU_001G087900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 177aa    MW: 19593.3 Da    PI: 8.7356
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.001G087900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.000524567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Phvul.001G087900.1 45 FQCHFCHRKFYTSQALGGHQNAH 67
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.31E-64272No hitNo description
PROSITE profilePS5015710.724572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MADPTAMYEF LKQPSNAGVK RPLPPPSTTA NITTTTNTAA TTRTFQCHFC HRKFYTSQAL  60
GGHQNAHKLE RAAARRQTNG LLPPPPLPLE PTLKPTETRP RPMLEPLEPT TGLFFHPPYW  120
LDMEPLQFQT THPYVTAATL PVPFHAASST VPQQQQVLSH NVDASDHVNI DLTLRL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007161660.11e-126hypothetical protein PHAVU_001G087900g
TrEMBLV7CU651e-126V7CU65_PHAVU; Uncharacterized protein
STRINGGLYMA19G26860.22e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1629333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-13C2H2 family protein